ENCODE
project aiming to create a ‘comprehensive list of functional elements of the human genome’; determined that 80% of the genome is functional, contradicting the scientific consensus of the time (2010)
Casual Role
a sequence has function f, if that sequence causes function f
Selected Effect
a sequence has function f, if that sequence exists because of function f
Genetic Role
a sequence has function f if the removal of that sequence prevents function f
Negative / Purifying Selection
the removal of alleles that are deleterious, purging polymorphisms that arise through natural selection and potentially leading to stabilising selection
Positive Selection
selection occurring when a sequence has changed because it has acquired a new function; possible to study between different human populations, but is difficult to identify in non-coding sequences
GnomAD
a database of whole genome and exome sequences, allowing the impact of variations to be studied; aimed to determine a base mutation rate that could be applied to the whole genome, finding that a few percent of the genome are more constrained than protein coding genes
Compensatory Evolution / Balancing Selection
selection theory stating that individual changes in the genome are not selected out of the population immediately, instead allowing another synonymous site to evolve at another site to compensate for the change
Transcription Factor Binding Entropy, tau
a measure of how much the order of a system changes when a transcription factor binds to a specific DNA sequence